membro de Combinatória Discreta Grupo de Pesquisa Matemática discreta e combinatória: teoria e ensino Grupo de Pesquisa
publicações selecionadas Searching and inferring colorful topological motifs in vertex-colored graphs Affixbäume Divide-and-Conquer Multiple Sequence Alignment Analysis of local genome rearrangement improves resolution of ancestral genomic maps in plants
theses/dissertations advising Bioinformatic Approaches for Genome Finishing Approximate Common Intervals Based Gene Cluster Models The Double Cut and Join Model with Insertions and Deletions Highspeed calculation of isotopic distributions using OpenCL and Fourier transformations Phylogeny-based analysis of gene clusters Development of computational methods for the analysis or metagenome and metatranscriptome data Biomarker discovery for personalized treatment -- Mining complex, multidimensional and heterogeneous data sets Genomics and Transcriptomics of the Industrial Acarbose Producer Actinoplanes sp. SE50/110 Reconstructing Modular Phage Recombinations with the Crisscross Jumping Alignment Algorithm Flexible protein annotation with sequence- and secondary structure information MeltDB: a software platform for the analysis and integration of metabolomics experiment data Unified Model of Genomic Distance Computation Non-additive Substitution Rate Functions in Distance-Based Phylogenetic Reconstructions MCC-IMS data analysis using automated spectra processing and explorative visualisation methods Effiziente Kompression von Biosequenzen Comparing organisms on the level of metabolism Multiple genome comparison based on overlap regions of pairwise local alignments Comparison of Insertion Predictions using an Error-Tolerant Similarity Model Biological applications for de Bruijn subgraphs and interval group testing Comparison of Metagenomic Data by identifying enriched Pathways in Metabolic Networks Computational Mass Spectrometry Method Development and Clinical Application Netzwerkbasierte Analysen genetischer Assoziationen zur Identifikation krankheitsrelevanter biologischer Prozesse Bioinformatic methods for the analysis and comparison of metagenomes and metatranscriptomes POPSEQ: Anchoring and ordering contig assemblies from next generation sequencing data by population sequencing Erweiterung des Sequence Analysis and Management Systems (SAMS) Comparative genomics on gene and single nucleotide level Detection of small inserted DNA fragments at deletion break-points using paired-end sequencing data ChimP -- Chimera Prediction with the Jumping Alignment Algorithm Funktionelle Annotation von Polymorphismen Unraveling Overlapping Insertions with Agglomerative Clustering Segment-based (reference-) alignment of short reads -- Profiling the T-cell receptor (beta chain) repertoire using next-generation sequencing Computational Methods for High-Throughput Metabolomics Integration und Analyse von Genotyp-Phänotyp-Assoziationsdaten Integration of differential expression analysis capabilities into a Viewer for Next Generation Sequencing Data utilizing baySeq, DESeq and an own approach Taxonomic Classification of Metagenomic Sequences Protein Clustering using an Ant Colony Layouting approach The interaction of skipped exons with variable flanking splice sites Combinatorial aspects of low-rank matrix factorization and two applications in bioinformatics Probabilistic arithmetic automata: applications of a stochastic computational framework in biological sequence analysis Clustering biological data by unraveling hidden transitive substructures New algorithms and lower bounds for sequential-access data compression